Phase transitions in phylogeny
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Publication:4461189
DOI10.1090/S0002-9947-03-03382-8zbMath1041.92018arXivmath/0304491OpenAlexW1846857138MaRDI QIDQ4461189
Publication date: 29 March 2004
Published in: Transactions of the American Mathematical Society (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/math/0304491
Trees (05C05) Problems related to evolution (92D15) Applications of graph theory (05C90) Applications of branching processes (60J85) Interacting random processes; statistical mechanics type models; percolation theory (60K35) Phase transitions (general) in equilibrium statistical mechanics (82B26)
Related Items (25)
Fast and reliable reconstruction of phylogenetic trees with indistinguishable edges ⋮ Reconstructibility of a general DNA evolution model ⋮ Towards optimal distance functions for stochastic substitution models ⋮ Robust reconstruction on trees is determined by the second eigenvalue. ⋮ Reconstruction of random colourings ⋮ On the variational distance of two trees ⋮ Consistency and convergence rate of phylogenetic inference via regularization ⋮ Fast phylogeny reconstruction through learning of ancestral sequences ⋮ On the inference of large phylogenies with long branches: how long is too long? ⋮ A phase transition for a random cluster model on phylogenetic trees. ⋮ The tightness of the Kesten-Stigum reconstruction bound of symmetric model with multiple mutations ⋮ Phase transition in the sample complexity of likelihood-based phylogeny inference ⋮ GIBBS MEASURES ON CAYLEY TREES: RESULTS AND OPEN PROBLEMS ⋮ Teasing Apart Two Trees ⋮ Global alignment of molecular sequences via ancestral state reconstruction ⋮ Reconstruction for the Potts model ⋮ Evolutionary trees and the Ising model on the Bethe lattice: A proof of Steel's conjecture ⋮ Unnamed Item ⋮ Information reconstruction on an infinite tree for a \(4\times 4\)-state asymmetric model with community effects ⋮ Sufficient condition for root reconstruction by parsimony on binary trees with general weights ⋮ Large degree asymptotics and the reconstruction threshold of the asymmetric binary channels ⋮ Phase Transition of the Reconstructability of a General Model with Different In-Community and Out-Community Mutations on an Infinite Tree ⋮ Species tree estimation under joint modeling of coalescence and duplication: sample complexity of quartet methods ⋮ An impossibility result for phylogeny reconstruction from \(k\)-mer counts ⋮ Broadcasting on random recursive trees
Cites Work
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- A short proof for a theorem of Harper about Hamming-spheres
- Gibbs measures and phase transitions
- Markov random fields on an infinite tree
- Remarks on the limiting Gibbs states on a (d+1)-tree
- Taxonomy with confidence
- Recovering a tree from the leaf colourations it generates under a Markov model
- Information flow on trees
- A phase transition for a random cluster model on phylogenetic trees.
- On the purity of the limiting Gibbs state for the Ising model on the Bethe lattice.
- The Ising model and percolation on trees and tree-like graphs
- Reconstruction on trees: Beating the second eigenvalue
- Broadcasting on trees and the Ising model.
- Robust reconstruction on trees is determined by the second eigenvalue.
- On the extremality of the disordered state for the Ising model on the Bethe lattice
- A few logs suffice to build (almost) all trees. II
- Evolutionary Trees Can be Learned in Polynomial Time in the Two-State General Markov Model
- A few logs suffice to build (almost) all trees (I)
- Percolation
- Optimal numberings and isoperimetric problems on graphs
- Additional Limit Theorems for Indecomposable Multidimensional Galton-Watson Processes
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