A Bayesian HMM with random effects and an unknown number of states for DNA copy number analysis
From MaRDI portal
Publication:4922611
DOI10.1080/00949655.2011.609818zbMath1348.92065MaRDI QIDQ4922611
Ramon Diaz-Uriarte, Oscar M. Rueda, Cristina Rueda
Publication date: 3 June 2013
Published in: Journal of Statistical Computation and Simulation (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1080/00949655.2011.609818
hidden Markov modelsBayesian inferencecopy number variationarray comparative genomic hybridizationreversible-jump Markov chain Monte Carlo
60J22: Computational methods in Markov chains
62P10: Applications of statistics to biology and medical sciences; meta analysis
62F15: Bayesian inference
92C40: Biochemistry, molecular biology
Uses Software
Cites Work
- Unnamed Item
- Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
- Hidden Markov models for alcoholism treatment trial data
- Hidden Markov models approach to the analysis of array CGH data
- Inference in hidden Markov models.
- Delayed rejection in reversible jump Metropolis-Hastings
- Markov and Semi-Markov Switching Linear Mixed Models Used to Identify Forest Tree Growth Components
- A pseudolikelihood approach for simultaneous analysis of array comparative genomic hybridizations
- Modeling Time Series of Animal Behavior by Means of a Latent‐State Model with Feedback
- Estimating the order of a hidden markov model
- A Bayesian Formulation of Exploratory Data Analysis and Goodness‐of‐fit Testing*
- Bayesian Inference in Hidden Markov Models Through the Reversible Jump Markov Chain Monte Carlo Method
- Mixed Hidden Markov Models
- Circular binary segmentation for the analysis of array-based DNA copy number data
- BAYESIAN HIDDEN MARKOV MODELS FOR LONGITUDINAL COUNTS
- Hidden Markov Models for Longitudinal Comparisons