Numerical Solution of a Degenerate, Diffusion Reaction Based Biofilm Growth Model on Structured Non-Orthogonal Grids

DOI10.4208/CICP.OA-2017-0165zbMath1475.92007OpenAlexW2911243514WikidataQ128540593 ScholiaQ128540593MaRDI QIDQ5160479

Md. Afsar Ali, Hermann J. Eberl, Rangarajan Sudarsan

Publication date: 29 October 2021

Published in: Communications in Computational Physics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.4208/cicp.oa-2017-0165

zbMATH Keywords

degenerate diffusionbiofilmsnon-orthogonal grids

Mathematics Subject Classification ID

Reaction-diffusion equations (35K57) Population dynamics (general) (92D25) Degenerate parabolic equations (35K65) Computational methods for problems pertaining to biology (92-08) Finite volume methods for initial value and initial-boundary value problems involving PDEs (65M08)

Related Items (2)

Unconditionally positive NSFD and classical finite difference schemes for biofilm formation on medical implant using Allen-Cahn equation ⋮ Analysis of a finite-volume scheme for a single-species biofilm model

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• An improved nearly-orthogonal structured mesh generation system with smoothness control functions
• Measure of circularity for parts of digital boundaries and its fast computation
• A degenerate diffusion-reaction model of an amensalistic biofilm control system: existence and simulation of solutions
• Time-discretization of a degenerate reaction-diffusion equation arising in biofilm modeling
• A mixed-culture biofilm model with cross-diffusion
• Modeling and simulation of a bacterial biofilm that is controlled by pH and protonated lactic acids
• Existence and longtime behavior of a biofilm model
• Orthogonal mapping
• An efficient explicit finite-difference scheme for simulating coupled biomass growth on nutritive substrates
• Time adaptive numerical solution of a highly degenerate diffusion-reaction biofilm model based on regularisation
• Exposure of biofilms to slow flow fields: the convective contribution to growth and disinfection
• Mechanically-driven spreading of bacterial populations
• Numerical methods for a nonlinear reaction-diffusion system modelling a batch culture of biofilm
• The finite volume method in computational fluid dynamics. An advanced introduction with OpenFOAM and Matlab
• Contributions to the mathematics of the nonstandard finite difference method and applications
• A New Deterministic Spatio-Temporal Continuum Model for Biofilm Development
• Computational Methods for Physicists
• A finite-difference scheme in the computational modelling of a coupled substrate-biomass system
• A positive finite-difference model in the computational simulation of complex biological film models
• AN EFFICIENT RECURSIVE ALGORITHM IN THE COMPUTATIONAL SIMULATION OF THE BOUNDED GROWTH OF BIOLOGICAL FILMS
• Mathematical Description of Microbial Biofilms
• Phase Field Models for Biofilms. I. Theory and One-Dimensional Simulations
• NUMERICAL RECIRCULATING FLOW CALCULATION USING A BODY-FITTED COORDINATE SYSTEM
• Bi-CGSTAB: A Fast and Smoothly Converging Variant of Bi-CG for the Solution of Nonsymmetric Linear Systems
• Fluid flow and heat transfer test problems for non-orthogonal grids: Bench-mark solutions
• On a fully discrete finite-difference approximation of a nonlinear diffusion–reaction model in microbial ecology
• DIFFUSION FROM AN INSTANTANEOUS POINT SOURCE WITH A CONCENTRATION-DEPENDENT COEFFICIENT

This page was built for publication: Numerical Solution of a Degenerate, Diffusion Reaction Based Biofilm Growth Model on Structured Non-Orthogonal Grids