SpaTopic
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Software:5977855
Topic Inference to Identify Tissue Architecture in Multiplexed Images
Last update: 17 January 2024
Software version identifier: 1.0.1
Copyright license: GNU General Public License
A novel spatial topic model to integrate both cell type and spatial information to identify the complex spatial tissue architecture on multiplexed tissue images without human intervention. The Package implements a Collapsed Gibbs sampling algorithm for inference. 'SpaTopic' is scalable to large-scale image datasets without extracting neighborhood information for every single cell. For more details on the methodology, see <https://xiyupeng.github.io/SpaTopic/>.
