A continuous-index hidden Markov jump process for modeling DNA copy number data

DOI10.1093/BIOSTATISTICS/KXP030MaRDI QIDQ3305000zbMATH OpenOpenAlexWikidataFDO

Authors Susann Stjernqvist, Tobias Rydén

Publication date 4 August 2020

Published in Biostatistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1093/biostatistics/kxp030

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10)

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Cites work

• A note on oligonucleotide expression values not being normally distributed
• Bayesian Hidden Markov Modeling of Array CGH Data
• EM versus Markov chain Monte Carlo for estimation of hidden Markov models: a computational perspective
• Hidden Markov models approach to the analysis of array CGH data
• Stochastic segmentation models for array-based comparative genomic hybridization data analysis

Cited in

(2)

• Hidden Markov models for the assessment of chromosomal alterations using high-throughput SNP arrays
• A continuous-time HMM approach to modeling the magnitude-frequency distribution of earthquakes

Describes a project that uses

Uses Software

• BioHMM

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