Stochastic segmentation models for array-based comparative genomic hybridization data analysis

DOI10.1093/BIOSTATISTICS/KXM031MaRDI QIDQ3526157zbMATH OpenOpenAlexWikidataFDO

Authors Tze Leung Lai, Haipeng Xing, Nancy R. Zhang

Publication date 25 September 2008

Published in Biostatistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1093/biostatistics/kxm031

zbMATH Keywords

array-CGHbreast cancerhidden Markov modelsjump probabilities

Mathematics Subject Classification ID

Bayesian inference (62F15) Estimation in survival analysis and censored data (62N02) Applications of statistics to biology and medical sciences; meta analysis (62P10)

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Cited in

(27)

• Fast estimation of posterior probabilities in change-point analysis through a constrained hidden Markov model
• A hierarchical Bayesian model for inference of copy number variants and their association to gene expression
• Sequential model selection-based segmentation to detect DNA copy number variation
• iBATCGH: integrative Bayesian analysis of transcriptomic and CGH data
• Identification of differential aberrations in multiple-sample array CGH studies
• Segmentation and estimation for SNP microarrays: A Bayesian multiple change-point approach
• Detecting genomic aberrations using products in a multiscale analysis
• A semiparametric Bayesian model for comparing DNA copy numbers
• A continuous-index hidden Markov jump process for modeling DNA copy number data
• A pseudolikelihood approach for simultaneous analysis of array comparative genomic hybridizations
• A Likelihood-Based Approach to the Estimation of Relative DNA Copy Number by Comparative Genomic Hybridization
• Change-point model on nonhomogeneous Poisson processes with application in copy number profiling by next-generation DNA sequencing
• A semiparametric change-point regression model for longitudinal observations
• Discussion on “Change-Points: From Sequential Detection to Biology and Back” by David Siegmund
• scientific article; zbMATH DE number 1405852 (Why is no real title available?)
• A Bayesian approach to inference about a change point model with application to DNA copy number experimental data
• Bayesian random segmentation models to identify shared copy number aberrations for array CGH data
• Circular binary segmentation for the analysis of array-based DNA copy number data
• A method for calling gains and losses in array CGH data
• A mixture model to characterize genomic alterations of tumors
• A Segmentation/Clustering Model for the Analysis of Array CGH Data
• A Bayes Regression Approach to Array-CGH Data
• Denoising array-based comparative genomic hybridization data using wavelets
• A latent class model with hidden Markov dependence for array CGH data
• Uncertainty Quantification in Dynamic Image Reconstruction with Applications to Cryo-EM
• Moment estimation in discrete shifting level model applied to fast array-CGH segmentation
• Dating the break in high-dimensional data

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