A semiparametric Bayesian model for comparing DNA copy numbers

DOI10.1214/15-BJPS283zbMATH Open1381.92070MaRDI QIDQ318959FDOQ318959

Authors: Yuan Ji, Veerabhadran Baladandayuthapani, Luis E. Nieto-Barajas 

Publication date: 6 October 2016

Published in: Brazilian Journal of Probability and Statistics (Search for Journal in Brave)

Full work available at URL: https://projecteuclid.org/euclid.bjps/1469807216

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zbMATH Keywords

Bayesian nonparametricsrandom effectsDirichlet process mixture modelbivariate spike and slab priorcircular binary segmentationcomparative genomic hybridization

Mathematics Subject Classification ID

Nonparametric estimation (62G05) Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

Cites Work

• A Predictive Approach to Model Selection
• Markov chains for exploring posterior distributions. (With discussion)
• Mixtures of Dirichlet processes with applications to Bayesian nonparametric problems
• A Bayesian analysis of some nonparametric problems
• Bayesian Variable Selection in Linear Regression
• Circular binary segmentation for the analysis of array-based DNA copy number data
• Hidden Markov models approach to the analysis of array CGH data
• Spatial smoothing and hot spot detection for CGH data using the fused lasso
• A semiparametric Bayesian model for randomised block designs
• Title not available (Why is that?)
• Ferguson distributions via Polya urn schemes
• Bayesian Hidden Markov Modeling of Array CGH Data
• Detecting differential gene expression with a semiparametric hierarchical mixture method
• Bayesian random segmentation models to identify shared copy number aberrations for array CGH data

Cited In (4)

• Bayesian–frequentist hybrid model with application to the analysis of gene copy number changes
• A random coefficients model for regional co-expression associated with DNA copy number
• Modeling association between DNA copy number and gene expression with constrained piecewise linear regression splines
• A Semiparametric Bayesian Model for Repeatedly Repeated Binary Outcomes

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