Bayesian random segmentation models to identify shared copy number aberrations for array CGH data

DOI10.1198/JASA.2010.AP09250MaRDI QIDQ5255677zbMATH OpenOpenAlexWikidataFDO

Authors Veerabhadran Baladandayuthapani, Yuan Ji, Rajesh Talluri, Luis E. Nieto-Barajas, Jeffrey S. Morris

Publication date 17 June 2015

Published in Journal of the American Statistical Association (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc3079218

zbMATH Keywords

functional data analysismixed modelsmixture modelscomparative genomic hybridization

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Bayesian problems; characterization of Bayes procedures (62C10)

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Cited in

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• Stochastic segmentation models for array-based comparative genomic hybridization data analysis
• Bayesian inference and dynamic prediction for multivariate longitudinal and survival data
• A Bayes Regression Approach to Array-CGH Data
• Identification of differential aberrations in multiple-sample array CGH studies
• A shifting level model algorithm that identifies aberrations in array-CGH data
• Efficient Bayesian regularization for graphical model selection
• Prediction in cancer genomics using topological signatures and machine learning
• A very fast and accurate method for calling aberrations in array-CGH data
• Generalized species sampling priors with latent beta reinforcements
• Nonparametric tests for longitudinal DNA copy number data
• A semiparametric Bayesian model for comparing DNA copy numbers
• Comparison of clinical subgroup aCGH profiles through pseudolikelihood ratio tests
• A Segmentation/Clustering Model for the Analysis of Array CGH Data
• Sequential model selection-based segmentation to detect DNA copy number variation
• A fused lasso latent feature model for analyzing multi-sample aCGH data
• Circular binary segmentation for the analysis of array-based DNA copy number data
• Segmentation and estimation for SNP microarrays: A Bayesian multiple change-point approach
• A method for calling gains and losses in array CGH data
• A latent class model with hidden Markov dependence for array CGH data
• A pseudolikelihood approach for simultaneous analysis of array comparative genomic hybridizations

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