Prediction in Cancer Genomics Using Topological Signatures and Machine Learning

DOI10.1007/978-3-030-43408-3_10zbMATH Open1448.62165OpenAlexW3038125657MaRDI QIDQ5118370FDOQ5118370

J. Arsuaga, Arina Ushakova, R. Sazdanović, Georgina Gonzalez

Publication date: 8 September 2020

Published in: Topological Data Analysis (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-030-43408-3_10

zbMATH Keywords

predictionmachine learningcancer genomicstopological signatures

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Learning and adaptive systems in artificial intelligence (68T05) Inference from stochastic processes and prediction (62M20) Protein sequences, DNA sequences (92D20) Persistent homology and applications, topological data analysis (55N31) Topological data analysis (62R40)

Cites Work

• Title not available (Why is that?)
• The Group Lasso for Logistic Regression
• Hidden Markov models approach to the analysis of array CGH data
• Statistical topological data analysis using persistence landscapes
• Morse theory for filtrations and efficient computation of persistent homology
• Applications of computational homology to the analysis of treatment response in breast cancer patients
• Simplicial Models and Topological Inference in Biological Systems

Cited In (3)

• Learning Oncogenic Pathways from Binary Genomic Instability Data
• What Are Higher-Order Networks?
• Multi-target QPDR classification model for human breast and colon cancer-related proteins using star graph topological indices

Uses Software

• R
• Gudhi
• Perseus
• jPlex
• Eirene
• Ripser
• KCsmart
• GitHub

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