Topological analysis of gene expression arrays identifies high risk molecular subtypes in breast cancer

DOI10.1007/S00200-012-0166-8MaRDI QIDQ714647zbMATH OpenOpenAlexFDO

Authors J. Arsuaga, Nils A. Baas, Daniel DeWoskin, Hideaki Mizuno, Catherine Park, Alexander Pankov

Publication date 11 October 2012

Published in Applicable Algebra in Engineering, Communication and Computing (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s00200-012-0166-8

zbMATH Keywords

gene expressioncomputational homologybreast cancer subtypes

Mathematics Subject Classification ID

Medical applications (general) (92C50) Biochemistry, molecular biology (92C40)

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Cites work

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• A Note on Combining Dependent Tests of Significance
• Application of homology theory to topology optimization of three-dimensional structures using genetic algorithm
• Applications of computational homology to the analysis of treatment response in breast cancer patients
• Computational homology
• Coverage in sensor networks via persistent homology
• Homology and symmetry breaking in Rayleigh-Bénard convection: Experiments and simulations
• Persistent homology -- a survey
• Topology and data
• Topology for Computing

Cited in

(6)

• Expression profiles in the progression of ductal carcinoma in the breast
• Prediction in cancer genomics using topological signatures and machine learning
• Simplicial models and topological inference in biological systems
• Cancer Fingerprints by Topological Data Analysis
• A topological data analysis approach on predicting phenotypes from gene expression data
• Approximating persistent homology in Euclidean space through collapses

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