Modeling association between DNA copy number and gene expression with constrained piecewise linear regression splines

DOI10.1214/12-AOAS605zbMath1288.62161arXiv1312.1795OpenAlexW3104603736WikidataQ60566208 ScholiaQ60566208MaRDI QIDQ2443145

Yanyan Li

Publication date: 4 April 2014

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1312.1795

Mathematics Subject Classification ID

Linear regression; mixed models (62J05) Applications of statistics to biology and medical sciences; meta analysis (62P10) Parametric inference under constraints (62F30) Medical applications (general) (92C50)

Related Items

Modeling association between DNA copy number and gene expression with constrained piecewise linear regression splines, Robust network-based analysis of the associations between (epi)genetic measurements

Uses Software

• ic.infer
• CGHcall
• DR-Integrator

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Regularized multivariate regression for identifying master predictors with application to integrative genomics study of breast cancer
• Model selection and Akaike's information criterion (AIC): The general theory and its analytical extensions
• Model selection using AIC in the presence of one-sided information
• A random coefficients model for regional co-expression associated with DNA copy number
• Modeling association between DNA copy number and gene expression with constrained piecewise linear regression splines
• Constrained Statistical Inference
• An Optimal Algorithm for Maximum-Sum Segment and Its Application in Bioinformatics
• Nonparametric Testing for DNA Copy Number Induced Differential mRNA Gene Expression
• Wald Criteria for Jointly Testing Equality and Inequality Restrictions
• Towards a Unified Theory of Inequality Constrained Testing in Multivariate Analysis
• Likelihood Ratio Test, Wald Test, and Kuhn-Tucker Test in Linear Models with Inequality Constraints on the Regression Parameters
• Asymptotic Statistics
• Model Selection: An Integral Part of Inference
• Inconsistency of the Bootstrap when a Parameter is on the Boundary of the Parameter Space
• Model Selection and Multimodel Inference
• Semidefinite Programming
• Circular binary segmentation for the analysis of array-based DNA copy number data
• A multivariate analogue of the one-sided test
• On the Distribution of the Likelihood Ratio