A hierarchical Bayesian model for inference of copy number variants and their association to gene expression

DOI10.1214/13-AOAS705zbMath1454.62315arXiv1404.3560WikidataQ39515956 ScholiaQ39515956MaRDI QIDQ2453661

Francesco Falciani, Michele Guindani, Mahlet G. Tadesse, Alberto Cassese, Marina Vannucci

Publication date: 10 June 2014

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1404.3560

zbMATH Keywords

hidden Markov modelsmeasurement errorgene expressionBayesian hierarchical modelscomparative genomic hybridization arraysvariable section

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Bayesian inference (62F15)

Related Items

Robust Bayesian Variable Selection for Gene–Environment Interactions, A hierarchical Bayesian model for inference of copy number variants and their association to gene expression

Uses Software

• BioHMM
• CNVassoc
• PennCNV
• COMPADRE
• HdBCS

Cites Work

• Unnamed Item
• An integrated hierarchical Bayesian model for multivariate eQTL mapping
• A Bayesian graphical modeling approach to microRNA regulatory network inference
• A sticky HDP-HMM with application to speaker diarization
• An integrative pathway-based clinical-genomic model for cancer survival prediction
• Experiments in stochastic computation for high-dimensional graphical models
• A hierarchical Bayesian model for inference of copy number variants and their association to gene expression
• Bayesian Variable Selection in Multinomial Probit Models to Identify Molecular Signatures of Disease Stage
• Bayesian Analysis of Mass Spectrometry Proteomic Data Using Wavelet-Based Functional Mixed Models
• Bayesian Hidden Markov Modeling of Array CGH Data
• Multivariate Bayesian Variable Selection and Prediction
• Sticky Hidden Markov Modeling of Comparative Genomic Hybridization
• Generalized Species Sampling Priors With Latent Beta Reinforcements
• A Segmentation/Clustering Model for the Analysis of Array CGH Data
• Detecting differential gene expression with a semiparametric hierarchical mixture method
• A stochastic partitioning method to associate high-dimensional responses and covariates