Identification of differential aberrations in multiple-sample array CGH studies

DOI10.1111/J.1541-0420.2010.01457.XMaRDI QIDQ3013965zbMATH OpenOpenAlexWikidataFDO

Authors Huixia Judy Wang, Jianhua Hu

Publication date 19 July 2011

Published in Biometrics (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc2955763

zbMATH Keywords

change pointmedian regressioncopy number aberrationfused lassosegmentationcommon aberration

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

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• Bayesian random segmentation models to identify shared copy number aberrations for array CGH data
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Cites work

• A Frisch-Newton algorithm for sparse quantile regression
• A method for calling gains and losses in array CGH data
• Bayesian Hidden Markov Modeling of Array CGH Data
• Circular binary segmentation for the analysis of array-based DNA copy number data
• Detecting Differential Expressions in GeneChip Microarray Studies
• Estimating the dimension of a model
• Hidden Markov models approach to the analysis of array CGH data
• Inference on quantile regression for heteroscedastic mixed models
• Quantile smoothing splines
• Spatial smoothing and hot spot detection for CGH data using the fused lasso
• Stochastic segmentation models for array-based comparative genomic hybridization data analysis
• Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties

Cited in

(11)

• Interquantile shrinkage and variable selection in quantile regression
• A shifting level model algorithm that identifies aberrations in array-CGH data
• Prediction in cancer genomics using topological signatures and machine learning
• A very fast and accurate method for calling aberrations in array-CGH data
• Shrinkage quantile regression for panel data with multiple structural breaks
• A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data
• Spatial smoothing and hot spot detection for CGH data using the fused lasso
• Sequential model selection-based segmentation to detect DNA copy number variation
• A fused lasso latent feature model for analyzing multi-sample aCGH data
• Bayesian random segmentation models to identify shared copy number aberrations for array CGH data
• The spike-and-slab quantile Lasso for robust variable selection in cancer genomics studies

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Uses Software

• SparseM

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