Sequential model selection-based segmentation to detect DNA copy number variation

DOI10.1111/BIOM.12478MaRDI QIDQ2827192zbMATH OpenOpenAlexWikidataFDO

Authors Jianhua Hu, Liwen Zhang, Huixia Judy Wang

Publication date 12 October 2016

Published in Biometrics (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc5018994

zbMATH Keywords

designsegmentationBayesian information criterioncopy-number variationarray-based CGHsequential model selection

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Optimal statistical designs (62K05) Sequential statistical analysis (62L10)

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Cites work

• scientific article; zbMATH DE number 1034037 (Why is no real title available?)
• Asymptotic properties of criteria for selection of variables in multiple regression
• Bayesian Hidden Markov Modeling of Array CGH Data
• Circular binary segmentation for the analysis of array-based DNA copy number data
• Detecting simultaneous change points in multiple sequences
• Detecting simultaneous variant intervals in aligned sequences
• Estimating the dimension of a model
• False discovery rates and copy number variation
• Identification of differential aberrations in multiple-sample array CGH studies
• Regression Model Selection—A Residual Likelihood Approach
• Shrinkage tuning parameter selection with a diverging number of parameters
• Simultaneous discovery of rare and common segment variants
• Spatial smoothing and hot spot detection for CGH data using the fused lasso
• Stochastic segmentation models for array-based comparative genomic hybridization data analysis
• The screening and ranking algorithm to detect DNA copy number variations

Cited in

(8)

• scientific article; zbMATH DE number 1961977 (Why is no real title available?)
• Optimal sparse segment identification with application in copy number variation analysis
• An online copy number variant detection method for short sequencing reads
• A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data
• Detecting genomic aberrations using products in a multiscale analysis
• Variational inference for coupled hidden Markov models applied to the joint detection of copy number variations
• A fused lasso latent feature model for analyzing multi-sample aCGH data
• The screening and ranking algorithm to detect DNA copy number variations

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