Detecting genomic aberrations using products in a multiscale analysis

DOI10.1111/J.1541-0420.2009.01337.XMaRDI QIDQ3064252zbMATH OpenOpenAlexWikidataFDO

Authors

Publication date 21 December 2010

Published in Biometrics (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc2942992

zbMATH Keywords

change pointcopy number variation\(p\)-valuemultiple comparisonwaveletarray-based comparative genomic hybridizationmultiscale product

Mathematics Subject Classification ID

Nonparametric hypothesis testing (62G10) Applications of statistics to biology and medical sciences; meta analysis (62P10) Sequential statistical analysis (62L10) Genetics and epigenetics (92D10) Testing in survival analysis and censored data (62N03)

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Cites work

• scientific article; zbMATH DE number 1470722 (Why is no real title available?)
• A Modified Bayes Information Criterion with Applications to the Analysis of Comparative Genomic Hybridization Data
• A Segmentation/Clustering Model for the Analysis of Array CGH Data
• A method for calling gains and losses in array CGH data
• Analysis of multiscale products for step detection and estimation
• Bayesian Hidden Markov Modeling of Array CGH Data
• Circular binary segmentation for the analysis of array-based DNA copy number data
• Denoising array-based comparative genomic hybridization data using wavelets
• Hidden Markov models approach to the analysis of array CGH data
• Resampling-based multiple testing for microarray data analysis (With comments)
• Robust Locally Weighted Regression and Smoothing Scatterplots
• Spatial smoothing and hot spot detection for CGH data using the fused lasso
• Stochastic segmentation models for array-based comparative genomic hybridization data analysis

Cited in

(7)

• Consistent testing for recurrent genomic aberrations
• scientific article; zbMATH DE number 1961977 (Why is no real title available?)
• A very fast and accurate method for calling aberrations in array-CGH data
• Nonparametric tests for longitudinal DNA copy number data
• False discovery rates and copy number variation
• Comparison of numerical representations of genomic sequences: choosing the best mapping for wavelet analysis
• Detection of significant genomic alterations via simultaneous minimal sojourns at a state by independent continuous-time Markov chains

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