A shifting level model algorithm that identifies aberrations in array-CGH data

DOI10.1093/BIOSTATISTICS/KXP051MaRDI QIDQ3305020zbMATH OpenOpenAlexWikidataFDO

Authors Alberto Magi, Matteo Benelli, Giuseppina Marseglia, Genni Nannetti, Maria Rosaria Scordo

Publication date 4 August 2020

Published in Biostatistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1093/biostatistics/kxp051

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10)

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Cites work

• Circular binary segmentation for the analysis of array-based DNA copy number data
• Estimating the Current Mean of a Normal Distribution which is Subjected to Changes in Time
• Hidden Markov models approach to the analysis of array CGH data

Cited in

(8)

• Moment estimation in discrete shifting level model applied to fast array-CGH segmentation
• A comprehensive continuous-time model for the appearance of CGH signal due to chromosomal missegregations during mitosis
• scientific article; zbMATH DE number 1961977 (Why is no real title available?)
• Identification of differential aberrations in multiple-sample array CGH studies
• A very fast and accurate method for calling aberrations in array-CGH data
• A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data
• A fused lasso latent feature model for analyzing multi-sample aCGH data
• A method for calling gains and losses in array CGH data

Describes a project that uses

Uses Software

• BioHMM

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