A kernel-independent treecode for general Rotne-Prager-Yamakawa tensor

DOI10.4208/AAMM.OA-2019-0322MaRDI QIDQ5157043zbMATH OpenOpenAlexFDO

Authors Lei Wang

Publication date 12 October 2021

Published in Advances in Applied Mathematics and Mechanics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.4208/aamm.oa-2019-0322

zbMATH Keywords

barycentric Lagrange interpolationfast summationgeneral Rotne-Prager-Yamakawa tensortreecode

Mathematics Subject Classification ID

Stochastic particle methods (65C35) Particle methods and lattice-gas methods (76M28) Stochastic analysis applied to problems in fluid mechanics (76M35) Suspensions (76T20)

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Cites work

• A Cartesian treecode for screened Coulomb interactions
• A fast algorithm for Brownian dynamics simulation with hydrodynamic interactions
• A fast algorithm for particle simulations
• A fast multipole method for the Rotne-Prager-Yamakawa tensor and its applications
• A kernel-independent adaptive fast multipole algorithm in two and three dimensions
• A kernel-independent treecode for general Rotne-Prager-Yamakawa tensor
• A particle method and adaptive treecode for vortex sheet motion in three-dimensional flow
• A treecode based on barycentric Hermite interpolation for electrostatic particle interactions
• A treecode-accelerated boundary integral Poisson-Boltzmann solver for electrostatics of solvated biomolecules
• Barycentric Lagrange Interpolation
• Fast evaluation of multiquadric RBF sums by a Cartesian treecode
• Fast evaluation of radial basis functions. I
• Fast Ewald summation for free-space Stokes potentials
• Generalization of the Rotne-Prager-Yamakawa mobility and shear disturbance tensors
• Lagrangian Interpolation at the Chebyshev Points xn,     cos (  /n),   = 0(1)n; some Unnoted Advantages
• Rotne-Prager-Yamakawa approximation for different-sized particles in application to macromolecular bead models
• RPYFMM: parallel adaptive fast multipole method for Rotne-Prager-Yamakawa tensor in biomolecular hydrodynamics simulations
• The black-box fast multipole method

Cited in

(8)

• RPYFMM: parallel adaptive fast multipole method for Rotne-Prager-Yamakawa tensor in biomolecular hydrodynamics simulations
• A treecode based on barycentric Hermite interpolation for electrostatic particle interactions
• Kernel aggregated fast multipole method. Efficient summation of Laplace and Stokes kernel functions
• A fast multipole method for the Rotne-Prager-Yamakawa tensor and its applications
• A fast algorithm for Brownian dynamics simulation with hydrodynamic interactions
• A kernel-independent treecode for general Rotne-Prager-Yamakawa tensor
• A kernel-independent treecode based on barycentric Lagrange interpolation
• Numerical experiments using the barycentric Lagrange treecode to compute correlated random displacements for Brownian dynamics simulations

Describes a project that uses

Uses Software

• TABI
• RPYFMM
• tabipb

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