A fast algorithm for Brownian dynamics simulation with hydrodynamic interactions

DOI10.1090/S0025-5718-2013-02672-5MaRDI QIDQ2840625zbMATH OpenOpenAlexFDO

Authors Shidong Jiang, Zhi Liang, Jingfang Huang

Publication date 23 July 2013

Published in Mathematics of Computation (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1090/s0025-5718-2013-02672-5

Mathematics Subject Classification ID

Random number generation in numerical analysis (65C10) Stochastic analysis applied to problems in fluid mechanics (76M35)

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Cites work

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Cited in

(11)

• Brownian simulation of many-particle binding to a reversible receptor array
• RPYFMM: parallel adaptive fast multipole method for Rotne-Prager-Yamakawa tensor in biomolecular hydrodynamics simulations
• Algorithms for Brownian dynamics across discontinuities
• A hierarchical matrix approach for computing hydrodynamic interactions
• A fast multipole method for the Rotne-Prager-Yamakawa tensor and its applications
• An approximate empirical Bayesian method for large-scale linear-Gaussian inverse problems
• Hierarchical orthogonal matrix generation and matrix-vector multiplications in rigid body simulations
• A kernel-independent treecode for general Rotne-Prager-Yamakawa tensor
• Revision of DASHMM: dynamic adaptive system for hierarchical multipole methods
• Numerical experiments using the barycentric Lagrange treecode to compute correlated random displacements for Brownian dynamics simulations
• A scalable computational platform for particulate Stokes suspensions

Describes a project that uses

Uses Software

• Matlab
• Browndye

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