A new adjacent pair 2D graphical representation of DNA sequences

DOI10.1142/S0218339013500058MaRDI QIDQ5411758zbMATH OpenOpenAlexFDO

Authors Manoj Gupta, Rajdeep Niyogi, M. Misra

Publication date 25 April 2014

Published in Journal of Biological Systems (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1142/s0218339013500058

zbMATH Keywords

alignment-free methoddual nucleotidephylogenetic treesequence similarity

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Protein sequences, DNA sequences (92D20)

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Cites work

• A 3D graphical representation of DNA sequences and its application

Cited in

(9)

• DUC-curve, a highly compact 2D graphical representation of DNA sequences and its application in sequence alignment
• A new graphical coding of DNA sequence and its similarity calculation
• New method for global alignment of 2 DNA sequences by the tree data structure
• A novel representation of DNA sequence based on CMI coding
• Alignment-free comparison of genome sequences by a new numerical characterization
• PNN-curve: a new 2D graphical representation of DNA sequences and its application
• Pairwise alignment of the DNA sequence using hypercomplex number representation
• A 2-D non-degenerate graphical representation of DNA sequences and its applications
• A new graph theoretical method for analyzing DNA sequences based on genetic codes

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• Rose

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