Algebraic Models and Their Use in Systems Biology
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Cites work
- A computational algebra approach to the reverse engineering of gene regulatory networks
- An algebraic approach to reverse engineering finite dynamical systems arising from biology
- An analysis of the Petri net based model of the human body iron homeostasis process
- AND-NOT logic framework for steady state analysis of Boolean network models
- Applications and Theory of Petri Nets 2004
- Attractor analysis of asynchronous Boolean models of signal transduction networks
- Boolean nested canalizing functions: a comprehensive analysis
- Fixed points and maximal independent sets in AND-OR networks
- Inferring biologically relevant models: nested canalyzing functions
- Nested canalyzing, unate cascade, and polynomial functions
- Noisy attractors and ergodic sets in models of gene regulatory networks
- On the computation of fixed points in Boolean networks
- On the relationship of steady states of continuous and discrete models arising from biology
- Parameter estimation for Boolean models of biological networks
- Probabilistic Boolean networks. The modeling and control of gene regulatory networks
- Reduction of Boolean network models
- Regulatory patterns in molecular interaction networks
- Reverse-engineering of polynomial dynamical systems
- Robustness and state-space structure of Boolean gene regulatory models
- Stochastic and delayed stochastic models of gene expression and regulation
- Stochastic modelling for systems biology.
- The core control system of intracellular iron homeostasis: a mathematical model
- The dynamics of conjunctive and disjunctive Boolean network models
- The number of multistate nested canalyzing functions
- The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in \textit{Drosophila melanogaster}
Cited in
(13)- On the number of driver nodes for controlling a Boolean network when the targets are restricted to attractors
- Algebraic systems biology: a case study for the Wnt pathway
- Controllability and observability of Boolean networks arising from biology
- Computer algebra in systems biology
- Algebra and geometry in the study of enzymatic cascades
- Stability analysis for discrete biological models using algebraic methods
- Inferring interactions in molecular networks via primary decompositions of monomial ideals
- scientific article; zbMATH DE number 2151174 (Why is no real title available?)
- Polynomial dynamical systems in systems biology
- Multistate nested canalizing functions and their networks
- Algebraic methods in mathematical biology
- Algebraic Systems Biology: Theses and Hypotheses
- A mathematical framework for agent based models of complex biological networks
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