Applying sequential rules to protein localization prediction

DOI10.1016/J.CAMWA.2006.12.086MaRDI QIDQ929148zbMATH OpenOpenAlexFDO

Authors Elena Baralis, Silvia Chiusano, Riccardo Dutto

Publication date 12 June 2008

Published in Computers & Mathematics with Applications (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.camwa.2006.12.086

zbMATH Keywords

classificationprotein localization siteprotein sequencessequential classification rule

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Computational methods for problems pertaining to biology (92-08) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Recommendations

• Sequence-driven features for prediction of subcellular localization of proteins
• Prediction of protein subcellular location using hydrophobic patterns of amino acid sequence

Cites work

• Compact representations of sequential classification rules
• scientific article; zbMATH DE number 823069 (Why is no real title available?)
• SPADE: An efficient algorithm for mining frequent sequences

Cited in

(4)

• Rule extraction from SVM for protein structure prediction
• Data mining in proteomics with learning classifier systems
• Generating fuzzy rules for protein classification
• Specificity rule discovery in HIV-1 protease cleavage site analysis

Describes a project that uses

Uses Software

• SPADE
• Psortb
• CMAR

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