Autoregressive modeling and feature analysis of DNA sequences

DOI10.1155/S111086570430925XMaRDI QIDQ1773682zbMATH OpenOpenAlexFDO

Authors Niranjan Chakravarthy

Publication date 3 May 2005

Published in EURASIP Journal on Applied Signal Processing (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1155/s111086570430925x

Mathematics Subject Classification ID

Time series, auto-correlation, regression, etc. in statistics (GARCH) (62M10) Biochemistry, molecular biology (92C40)

Review text

Summary: A parametric signal processing approach for DNA sequence analysis based on autoregressive (AR) modeling is presented. AR model residual errors and AR model parameters are used as features. The AR residual error analysis indicate a high specificity of coding DNA sequences, while AR feature-based analysis helps distinguish between coding and noncoding DNA sequences. An AR model-based string searching algorithm is also proposed. The effect of several types of numerical mapping rules in the proposed method is demonstrated.

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