BDgraph

MaRDI QIDQ26711swMATHCRANFDO

Authors A. Mohammadi, Ernst C. Wit, Reza Mohammadi

Last update 29 August 2025

Copyright license GNU General Public License, version 2.0, GNU General Public License, version 3.0

Software version identifier 2.72, 1.0, 1.1, 1.2, 2.0, 2.1, 2.2, 2.3, 2.4, 2.5, 2.6, 2.7, 2.8, 2.9, 2.10, 2.11, 2.12, 2.13, 2.14, 2.15, 2.16, 2.17, 2.18, 2.19, 2.20, 2.21, 2.22, 2.23, 2.24, 2.25, 2.26, 2.27, 2.28, 2.29, 2.30, 2.31, 2.32, 2.33, 2.34, 2.35, 2.36, 2.37, 2.38, 2.39, 2.40, 2.41, 2.42, 2.43, 2.44, 2.45, 2.46, 2.47, 2.48, 2.49, 2.50, 2.51, 2.52, 2.53, 2.54, 2.55, 2.56, 2.57, 2.58, 2.59, 2.60, 2.61, 2.62, 2.63, 2.64, 2.65, 2.66, 2.67, 2.68, 2.69, 2.70, 2.71, 2.73, PACKAGES.rds, 2.74

Official website https://cran.r-project.org/web/packages/BDgraph/index.html

Source code repository https://github.com/cran/BDgraph

Description

Advanced statistical tools for Bayesian structure learning in undirected graphical models, accommodating continuous, ordinal, discrete, count, and mixed data. It integrates recent advancements in Bayesian graphical models as presented in the literature, including the works of Mohammadi and Wit (2015) <doi:10.1214/14-BA889>, Mohammadi et al. (2021) <doi:10.1080/01621459.2021.1996377>, Dobra and Mohammadi (2018) <doi:10.1214/18-AOAS1164>, and Mohammadi et al. (2023) <doi:10.48550/arXiv.2307.00127>.

Cites work

• Accelerating Bayesian Structure Learning in Sparse Gaussian Graphical Models
• Bayesian Structure Learning in Sparse Gaussian Graphical Models
• Loglinear model selection and human mobility

Cited in

(62)

• BayesianGLasso
• BigQuic
• glassoFast
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• huge
• Optimal Bayesian smoothing of functional observations over a large graph
• Estimating heterogeneous gene regulatory networks from zero-inflated single-cell expression data
• Guest editors' introduction to the special issue ``Network psychometrics in action: methodological innovations inspired by empirical problems
• Objective Bayesian edge screening and structure selection for Ising networks
• Bayesian graphical models for modern biological applications
• Bayesian inference in nonparanormal graphical models
• Using Bayesian latent Gaussian graphical models to infer symptom associations in verbal autopsies
• scrime
• A focused information criterion for graphical models in fMRI connectivity with high-dimensional data
• Connectome Viewer Toolkit
• Bayesian analysis of nonparanormal graphical models using rank-likelihood
• FBFsearch
• Bayesian structure learning in sparse Gaussian graphical models
• PharmacoGx
• Matrix eQTL
• netgwas
• An Expectation Conditional Maximization Approach for Gaussian Graphical Models
• ppcor
• GANPA
• GSNCA
• smappR
• IsingSampler
• AS 177
• ssgraph
• bnstruct
• HdBCS
• EMVS
• mgm
• IsingFit
• BGGM
• spectralGraphTopology
• Long-tailed graphical model and frequentist inference of the model parameters for biological networks
• The G-Wishart Weighted Proposal Algorithm: Efficient Posterior Computation for Gaussian Graphical Models
• Bayesian Variable Selection for Gaussian Copula Regression Models
• Bayesian Double Feature Allocation for Phenotyping With Electronic Health Records
• Continuous-time birth-death MCMC for Bayesian regression tree models
• Learning Gaussian graphical models with fractional marginal pseudo-likelihood
• dfa
• PLNseq
• openVA
• GHS
• BayesSUR
• FastGGM
• bayesWatch
• rgm
• easybgm
• Loop-based conic multivariate adaptive regression splines is a novel method for advanced construction of complex biological networks
• heteromixgm
• GWnorm
• bmixture
• Loglinear model selection and human mobility

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