BM-map: Bayesian mapping of multireads for next-generation sequencing data

DOI10.1111/J.1541-0420.2011.01605.XMaRDI QIDQ2893378zbMATH OpenOpenAlexWikidataFDO

Authors Yuan Ji, Yanxun Xu, Qiong Zhang, Kam-Wah Tsui, Yuan Yuan, Clift jun. Norris, Shoudan Liang, Han Liang

Publication date 20 June 2012

Published in Biometrics (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc3190637

zbMATH Keywords

data augmentationread alignmentRNA-seqshort readssolexa sequencingtranscriptome

Mathematics Subject Classification ID

Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Software, source code, etc. for problems pertaining to biology (92-04) Computational methods for problems pertaining to biology (92-08) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

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Cites work

• Methods for allocating ambiguous short-reads
• Model-based quality assessment and base-calling for second-generation sequencing data
• The Calculation of Posterior Distributions by Data Augmentation

Cited in

(4)

• Generate gene expression profile from high-throughput sequencing data
• Non-ignorable fuzziness in granular counts: the case of RNA-seq data
• A Bayesian feature allocation model for tumor heterogeneity
• Methods for allocating ambiguous short-reads

Describes a project that uses

Uses Software

• Soap
• BM-map

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