Comparing the continuous representation of time-series expression profiles to identify differentially expressed genes

DOI10.1073/PNAS.1732547100MaRDI QIDQ5460804zbMATH OpenOpenAlexWikidataFDO

Authors Ziv Bar-Joseph, Georg Gerber, Itamar Simon, David K. Gifford, Tommi S. Jaakkola

Publication date 19 July 2005

Published in Proceedings of the National Academy of Sciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1073/pnas.1732547100

Mathematics Subject Classification ID

Time series, auto-correlation, regression, etc. in statistics (GARCH) (62M10) Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40)

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Cites work

• Cluster analysis of gene expression dynamics
• Statistical modeling of large microarray data sets to identify stimulus-response profiles

Cited in

(12)

• A wavelet-based approach for imputation in nonstationary multivariate time series
• Gene hunting with forests for multigroup time course data
• Bayesian state space models for dynamic genetic network construction across multiple tissues
• Identifying temporally differentially expressed genes through functional principal components analysis
• On Gene Ranking Using Replicated Microarray Time Course Data
• Modeling persistent trends in distributions
• An order estimation based approach to identify response genes for microarray time course data
• Bayesian Hierarchical Modeling for Time Course Microarray Experiments
• Functional Hierarchical Models for Identifying Genes with Different Time‐Course Expression Profiles
• A multivariate empirical Bayes statistic for replicated microarray time course data
• Identifying differentially expressed genes in unreplicated multiple-treatment microarray timecourse experiments
• Bayesian models for two-sample time-course microarray experiments

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