Counting RNA pseudoknotted structures (extended abstract)

MaRDI QIDQ4591366zbMATH OpenFDO

Authors Cédric Saule, Mireille Régnier, Jean-Marc Steyaert, Alain Denise

Publication date 14 November 2017

Full work available at URL http://www.dmtcs.org/dmtcs-ojs/index.php/proceedings/article/view/dmAN0180

zbMATH Keywords

bijective combinatoricsbioinformaticsenumerationpseudoknotsRNA structures

Mathematics Subject Classification ID

Computational methods for problems pertaining to biology (92-08) Protein sequences, DNA sequences (92D20)

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Cited in

(13)

• Statistics of topological RNA structures
• Automated prediction of three-way junction topological families in RNA secondary structures
• Combinatorics of RNA structures with pseudoknots
• Comparing two \(K\)-category assignments by a \(K\)-category correlation coefficient
• A generating tree approach to k-nonnesting partitions and permutations
• Combinatorial Computational Biology of RNA
• Enumerating RNA structures, including pseudoknots of any topology
• Finding Common RNA Pseudoknot Structures in Polynomial Time
• Classifying RNA pseudoknotted structures
• Counting infinitely by oritatami co-transcriptional folding
• Combinatorial analysis of interacting RNA molecules
• Combinatorics of RNA-RNA interaction
• On the problem of reconstructing a mixture of \textsc{rna} structures

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