DEploid.utils

MaRDI QIDQ7386061CRANFDO

Authors Joe Zhu, Jacob Almagro-Garcia, Gil McVean

Last update 19 December 2024

Copyright license Apache License

Software version identifier 0.0.1

Description

'DEploid' (Zhu et.al. 2018 <doi:10.1093/bioinformatics/btx530>) is designed for deconvoluting mixed genomes with unknown proportions. Traditional phasing programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting. This package provides R functions to support data analysis and results interpretation.

Cites work

• Deconvolution of multiple infections in Plasmodium falciparum from high throughput sequencing data

Cited in

(1)

• DEploid

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