Single-cell RNA-seq count data used in differential expression benchmark study

DOI10.5281/zenodo.7751831Zenodo7751831MaRDI QIDQ6688537FDOQ6688537

Dataset published at Zenodo repository.

Florian Halbritter, Christoph Hafemeister

Publication date: 20 March 2023

Copyright license: Creative Commons Attribution 4.0 International

Description

Count matrices and meta data tables fromsimulated and real world immune cell single-cell RNA-seq experiments. All files are in Rds format and can be read byR using readRDS(). 10k_*: These files contain a filtered version of the 10k Human PBMCs, 3 v3.1data published by 10x Genomics blueprint_data.Rds: This file contains the bulk RNA-seqdata downloaded from BLUEPRINT blueprint_immune_comparisons.Rds: Results from running three bulk RNA-seq differential expression methods sim_data*: These files contain the count matrices and meta data tables for the simulated data. Every filecontains a list of 13 replicates.

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