Xiao et al, Oligodendrocyte Precursor Cells Sculpt the Visual System by Regulating Axonal Remodeling [Dataset]
DOI10.5281/zenodo.5894604Zenodo5894604MaRDI QIDQ6707513FDOQ6707513
Dataset published at Zenodo repository.
Xiao Yan, Tim Czopka, Laura J Hoodless, Ruben Portugues, Luigi Petrucco
Publication date: 22 January 2022
Copyright license: Creative Commons Attribution 4.0 International
Raw data from the behavior and imaging experiments of Xiao et al., Nature Neuroscience 2022. For additional details about the acquisition of each part of the dataset, refer to the methods section of the paper. From this dataset, using the published code, all the figures relative to the imaging in the optic tectum can be generatedand all the cumulative statistics for the behavioural assays run with Stytra recomputed. Organisation of the dataset This dataset is organised in the following subdirectories: - freely_swimming: contains the data for the freely swimming experiments quantifying motor activity in the various ablated groups. It contains subfolders of groups, each of which contains the Stytra raw data directories for all fish of that group. Refer to `Stytra` and `bouter` documentation for further details about the files. - OMR: contains the data for the quantification of OMR reflex across different spatial frequencies. It contains subfolders for the control and ablated group, each of which contains the Stytra raw data directories for all fish of that group. - receptive_field_imaging: contains the imaging data for the receptive field estimation. Subfolders contains, for each individual fish (both ablated and controls are pooled in the same directory): - stytra raw output from the experiment - data_from_suite2p_unfiltered.h5: `flammkuchen`-loadable `.h5` file that contains the raw fluorescent trace - anatomy.mask: `flammkuchen`-loadable mask file saved by the `pypra` tool that was used for segmenting the tectum, delimiting the region of the tectum The folder contains an additional file, `manual_alignment_offsets.h5`, where the offsets of the manual morphing across fish were saved.
This page was built for dataset: Xiao et al, Oligodendrocyte Precursor Cells Sculpt the Visual System by Regulating Axonal Remodeling [Dataset]
