Data from: Individual Movement - Sequence Analysis Method (IM-SAM): characterising spatio-temporal patterns of animal trajectories across scales and landscapes
DOI10.5281/zenodo.1254230Zenodo1254230MaRDI QIDQ6708816FDOQ6708816
Dataset published at Zenodo repository.
Nicolas Morellet, Robin Sandfort, Johannes de Groeve, Francesca Cagnacci, Mark Hewison, John Linnell D.c., Benedikt Gehr, Max Kroeschel, Marco Heurich, Atle Mysterud, Nathan Ranc, Nadège Bonnot, Nico van de Weghe
Publication date: 29 May 2018
Copyright license: Creative Commons Attribution 4.0 International
Dataset included in Zenodo supports the analyses performed in Individual Movement - Sequence Analysis Methods (IM-SAM) characterising spatio-temporal patterns of animal trajectories across scales and landscapes. The dataset includes one RDS file, that can be easily loaded into R using the readRDS function. The RDS file consists out of a list including two objects per animal: Object 1 contains a data frame with the real and simulated sequences for an animal. e.g., ls11 Object 2 contains the home range in raster format of an animal. e.g., ls12 The data frames in object 1 contain real habitat use sequences and corresponding simulated habitat use sequences generated in the home range of the specific individual (900 simulated sequences: 6 habitat selection rules x 3 selection coefficients x 50 repetitions). Open and closed habitats are respectively encoded by 0 and 1. The first 96 columns of each row in a data frame represent a 16-day habitat use sequence, with a fixed 4-hour relocation interval (0, 4, 8, 12, 16 and 20h). Column names are named as follows: Day_1_0h, Day_1_4h,..., Day_16_20h. In the next columns we provide the selection coefficients (columns 97-99), the habitat selection rules (or pattern, columns 100-102) and the number of missing values (mvs, columns, 103-104) for each of the real and simulated sequences. Note that simulated sequences have no missing values (i.e. values are always 0.00) and for real sequences there is no selection coefficient or habitat selection rule (i.e. values are always xxx). Rownames of simulated sequences are composed out of the habitat selection rule (c, o, a24, a33, a42 and u), the selection coefficient (5, 10, 50) and the replicate (1 to 50), separated by dashes. For example, the first simulated sequence in the first data frame (ls11[1,]) is described as a24_10_1. The rownames of real sequences instead are composed out of the individuals identifier, the biweekly period (1 to 23) and the year. For example, the first real sequence in the first data frame (ls11[901,]) is described as 1_5_2006.
This page was built for dataset: Data from: Individual Movement - Sequence Analysis Method (IM-SAM): characterising spatio-temporal patterns of animal trajectories across scales and landscapes
