Elastic analysis of irregularly or sparsely sampled curves

DOI10.48550/ARXIV.2104.11039MaRDI QIDQ85670zbMATH OpenFDO

Authors Lisa Steyer, Almond Stöcker, Sonja Greven, Almond Stöcker, Sonja Greven

Publication date 22 April 2021

Published in Biometrics (Search for Journal in Brave)

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL https://arxiv.org/abs/2104.11039

zbMATH Keywords

functional data analysiscurve alignmentFisher-Rao Riemannian metricmultivariate functional dataregistrationsquare-root-velocity transformationwarping

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10)

Abstract: We provide statistical analysis methods for samples of curves when the image but not the parametrisation of the curves is of interest. A parametrisation invariant analysis can be based on the elastic distance of the curves modulo warping, but existing methods have limitations in common realistic settings where curves are irregularly and potentially sparsely observed. We provide methods and algorithms to approximate the elastic distance for such curves via interpreting them as polygons. Moreover, we propose to use spline curves for modelling smooth or polygonal Fr'echet means of open or closed curves with respect to the elastic distance and show identifiability of the spline model modulo warping. We illustrate the use of our methods for elastic mean and distance computation by application to two datasets. The first application clusters sparsely sampled GPS tracks based on the elastic distance and computes smooth means for each cluster to find new paths on Tempelhof field in Berlin. The second classifies irregularly sampled handwritten spirals of Parkinson's patients and controls based on the elastic distance to a mean spiral curve computed using our approach. All developed methods are implemented in the exttt{R}-package exttt{elasdics} and evaluated in simulations.

Recommendations

• Elastic statistical shape analysis of biological structures with case studies: a tutorial
• Bayesian clustering of shapes of curves
• Elastic shape analysis of functions, curves and trajectories
• Analysis of AneuRisk65 data: elastic shape registration of curves
• Shape of elastic strings in Euclidean space

Cites work

• scientific article; zbMATH DE number 3642411 (Why is no real title available?)
• scientific article; zbMATH DE number 3053873 (Why is no real title available?)
• A general framework for functional regression modelling
• Curve Registration
• Dynamic programming algorithm optimization for spoken word recognition
• Functional Data Analysis for Sparse Longitudinal Data
• Functional and shape data analysis
• Functional data analysis of amplitude and phase variation
• Functional data analysis.
• Modeling motor learning using heteroscedastic functional principal components analysis
• Optimal reparametrizations in the square root velocity framework
• Precise matching of PL curves in R^N in the square root velocity framework
• Statistical shape analysis. With applications in R

Cited in

(5)

• Comments on: ``Shape-based functional data analysis
• Rejoinder on: ``Shape-based functional data analysis
• Archetypal curves in the shape and size space: discovering the salient features of curved big data by representative extremes
• Multiple closed curve modeling with uncertainty quantification for shape analysis
• Functional data analysis: an introduction and recent developments

This page was built for publication: Elastic analysis of irregularly or sparsely sampled curves

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q85670)