Erik Winfree

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List of research outcomes

This list is not complete and representing at the moment only items from zbMATH Open and arXiv. We are working on additional sources - please check back here soon!

PublicationDate of PublicationType
Verifying polymer reaction networks using bisimulation
Theoretical Computer Science
2020-10-13Paper
Chemical reaction networks and stochastic local search2019-12-05Paper
Efficient parameter estimation for DNA kinetics modeled as continuous-time Markov chains2019-12-05Paper
Reversible computation using swap reactions on a surface2019-12-05Paper
Stochastic chemical reaction networks for robustly approximating arbitrary probability distributions
Theoretical Computer Science
2019-11-22Paper
Verifying chemical reaction network implementations: a bisimulation approach
Theoretical Computer Science
2019-06-18Paper
Verifying chemical reaction network implementations: a pathway decomposition approach
Theoretical Computer Science
2019-06-18Paper
Optimizing tile set size while preserving proofreading with a DNA self-assembly compiler2018-11-08Paper
Inferring parameters for an elementary step model of DNA structure kinetics with locally context-dependent Arrhenius rates2018-02-02Paper
Chemical Boltzmann machines
(available as arXiv preprint)
2018-02-02Paper
A general-purpose CRN-to-DSD compiler with formal verification, optimization, and simulation capabilities2018-02-02Paper
Active self-assembly of algorithmic shapes and patterns in polylogarithmic time
Proceedings of the 4th conference on Innovations in Theoretical Computer Science
2017-05-16Paper
Active self-assembly of algorithmic shapes and patterns in polylogarithmic time
Proceedings of the 4th conference on Innovations in Theoretical Computer Science
2017-05-16Paper
Verifying chemical reaction network implementations: a bisimulation approach
Lecture Notes in Computer Science
2016-11-30Paper
Time complexity of computation and construction in the chemical reaction network-controlled tile assembly model
Lecture Notes in Computer Science
2016-11-30Paper
Simple evolution of complex crystal species
Natural Computing
2016-07-08Paper
Universal computation and optimal construction in the chemical reaction network-controlled tile assembly model
Lecture Notes in Computer Science
2015-09-30Paper
Leakless DNA strand displacement systems
Lecture Notes in Computer Science
2015-09-30Paper
Stochastic simulation of the kinetics of multiple interacting nucleic acid strands
Lecture Notes in Computer Science
2015-09-30Paper
Parallel and scalable computation and spatial dynamics with DNA-based chemical reaction networks on a surface
Lecture Notes in Computer Science
2014-10-08Paper
The program-size complexity of self-assembled squares (extended abstract)
Proceedings of the thirty-second annual ACM symposium on Theory of computing
2014-09-26Paper
DNA Sticky End Design and Assignment for Robust Algorithmic Self-assembly
Lecture Notes in Computer Science
2014-07-07Paper
Erratum to ``The computational power of Benenson automata''
Theoretical Computer Science
2011-12-19Paper
Efficient Turing-universal computation with DNA polymers
Lecture Notes in Computer Science
2011-01-28Paper
Programmable control of nucleation for algorithmic self-assembly
SIAM Journal on Computing
2010-09-06Paper
Programmable control of nucleation for algorithmic self-assembly
SIAM Journal on Computing
2010-09-06Paper
Computation with finite stochastic chemical reaction networks
Natural Computing
2009-11-04Paper
Error suppression mechanisms for DNA tile self-assembly and their simulation
Natural Computing
2009-10-19Paper
Complexity of Compact Proofreading for Self-assembled Patterns
DNA Computing
2009-04-02Paper
Complexity of Self‐Assembled Shapes
SIAM Journal on Computing
2008-01-03Paper
Fault-Tolerance in Biochemical Systems
Lecture Notes in Computer Science
2007-11-29Paper
Thermodynamic Analysis of Interacting Nucleic Acid Strands
SIAM Review
2007-03-27Paper
DNA Computing
Lecture Notes in Computer Science
2006-10-19Paper
DNA Computing
Lecture Notes in Computer Science
2006-01-10Paper
DNA Computing
Lecture Notes in Computer Science
2006-01-10Paper
DNA Computing
Lecture Notes in Computer Science
2006-01-10Paper
The computational power of Benenson automata
Theoretical Computer Science
2005-12-05Paper
scientific article; zbMATH DE number 1738642 (Why is no real title available?)2002-05-07Paper
scientific article; zbMATH DE number 1568804 (Why is no real title available?)2001-05-17Paper
scientific article; zbMATH DE number 1241360 (Why is no real title available?)1999-08-31Paper
scientific article; zbMATH DE number 1241361 (Why is no real title available?)1999-05-18Paper
scientific article; zbMATH DE number 1241374 (Why is no real title available?)1999-01-17Paper


Research outcomes over time


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