Evaluation of statistical tests for ethno-SNP selection

MaRDI QIDQ3161556zbMATH OpenFDO

Authors Gaolin Zheng, Chung-Hao Chen, Tom Milledge

Publication date 15 October 2010

Full work available at URL http://scientificadvances.co.in/artical/4/38

zbMATH Keywords

chi-squared testethno-classificationKruskal-Wallis testSNP selectionsupport vector machine

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10)

Recommendations

• CLUSTAG & WCLUSTAG: Hierarchical Clustering Algorithms for Efficient Tag-SNP Selection
• Testing SNPs and sets of SNPs for importance in association studies
• Selection of minimum subsets of single nucleotide polymorphisms to capture haplotype block diversity
• Sample size determination for classifiers based on single-nucleotide polymorphisms
• Features selection using parametric and non-parametric methods: tag SNPs selection using GA-SVM and GA-KNN

Cited in

(2)

• Sample size determination for classifiers based on single-nucleotide polymorphisms
• A cross-population extended haplotype-based homozygosity score test to detect positive selection in genome-wide scans

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