Exact simulation of conditioned Wright-Fisher models

DOI10.1016/J.JTBI.2014.08.027MaRDI QIDQ2341193zbMATH OpenOpenAlexWikidataFDO

Authors Lei Zhao, Martin Lascoux, David Waxman

Publication date 23 April 2015

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2014.08.027

zbMATH Keywords

Markov chainvisualisationstochastic processrandom genetic driftconditioned trajectories

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Genetics and epigenetics (92D10) Problems related to evolution (92D15)

Recommendations

• Exact simulation of the Wright-Fisher diffusion
• Probability distribution of haplotype frequencies under the two-locus Wright-Fisher model by diffusion approximation
• Exact simulation of coupled Wright–Fisher diffusions
• Wright-Fisher diffusion bridges
• Ancestral Inference in Population Genetics Models with Selection (with Discussion)

Cites work

• Analysis and rejection sampling of Wright-Fisher diffusion bridges
• Conditional brownian motion and the boundary limits of harmonic functions
• Fixation at a locus with multiple alleles: structure and solution of the Wright Fisher model
• Mathematical population genetics. I: Theoretical introduction.

Cited in

(11)

• Equilibrium distributions and simulation methods for age structured populations
• Statistical inference for stochastic differential equations
• An informational transition in conditioned Markov chains: applied to genetics and evolution
• Ancestral Inference in Population Genetics Models with Selection (with Discussion)
• Exact simulation of coupled Wright–Fisher diffusions
• A review on Monte Carlo simulation methods as they apply to mutation and selection as formulated in Wright-Fisher models of evolutionary genetics
• Exact simulation of the Wright-Fisher diffusion
• Wright-Fisher diffusion bridges
• Analysis and rejection sampling of Wright-Fisher diffusion bridges
• Exact results for the probability and stochastic dynamics of fixation in the Wright-Fisher model
• Conditions for fixation of an allele in the density-dependent wright–Fisher models

Describes a project that uses

Uses Software

• MSMS

This page was built for publication: Exact simulation of conditioned Wright-Fisher models

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2341193)