Example datasets generated with Stytra

DOI10.5281/zenodo.1692080Zenodo1692080MaRDI QIDQ6707497FDOQ6707497

Dataset published at Zenodo repository.

Ruben Portugues, Vilim Štih, Luigi Petrucco

Publication date: 29 November 2018

Copyright license: Creative Commons Attribution 4.0 International

Description

Example datasets accompanying Stytra with: example_closed_loop_embedded.zip Behavioral data from a closed loop oculomotor response paradigm. The fish was swimming in response to backward-moving gratings controlled in closed loop. The code for the protocol is here. example_imaging.zip Behavioral and calcium imaging data from a closed loop oculomotor response paradigm in a transgenic Huc:GCaMP6f fish. The fish was swimming in response to backward-moving gratings controlled in closed loop, while a plane of the fish brain was scanned with a two-photon microscope. The code for the protocol is here. replication_portugues2011.zip Dataset acquired with the experimental protocol described in Portugues and Engert, 2011, reproduced within Stytra. The code for the protocol is here. example_trace_cheap_setup.zip Behavioral data from a closed loop oculomotor response paradigm in the low-cost behavioral rig described in the article. The code for the protocol is here. example_eye_motion.zip eye motion in response to sinusoidal rotation of black and white windmill stimuli. The code for the protocol is here. phototaxis.zip Replication of the Huang et. al Current Biology. 2013 study. For 10 s, the right side of the visual field is illuminated, while the left side is kept dark. Then, for 10 s the full field is bright, which repeats 60-80 times. The code for the protocol is here. All datasets were acquired with 6-8dpf larvae of Danio Rerio. Notebooks demonstrating analysis of this data are avilable at github

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