Expected frequencies of DNA patterns using whittle's formula

DOI10.2307/3214691MaRDI QIDQ3988130zbMATH OpenOpenAlexFDO

Authors Richard Cowan

Publication date 28 June 1992

Published in Journal of Applied Probability (Search for Journal in Brave)

Full work available at URL https://doi.org/10.2307/3214691

zbMATH Keywords

analysis of DNA sequencesdinucleotideMarkov chaintransition counts

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20)

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• Conditional exact tests for Markovianity and reversibility in multiple categorical sequences
• Moments of the count of a regular expression in a heterogeneous random sequence
• On the First k Moments of the Random Count of a Pattern in a Multistate Sequence Generated by a Markov Source
• Sparse approaches for the exact distribution of patterns in long state sequences generated by a Markov source
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• Exact distribution of word counts in shuffled sequences
• Scalable test of statistical significance for protein-DNA binding changes with insertion and deletion of bases in the genome

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