Folding of proteins in Go models with angular interactions

DOI10.1016/J.PHYSA.2003.08.034MaRDI QIDQ1412908zbMATH OpenOpenAlexFDO

Authors Marek Cieplak, Trinh Xuan Hoang

Publication date 30 November 2003

Published in Physica A (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/cond-mat/0306506

zbMATH Keywords

molecular dynamicscontact potentialsfolding times

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

Abstract: Molecular dynamics studies of Go models of proteins with the 10-12 contact potential and the bond and dihedral angle terms indicate statistical similarities to other Go models, e.g. with the Lennard-Jones contact potentials. The folding times depend on the protein size as power laws with the exponents depending on the native structural classes. There is no dependence of the folding times on the relative contact order even though the folding scenarios are governed mostly by the contact order.

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Cites work

• Colloquium: Geometrical approach to protein folding: a tube picture

Cited in

(3)

• Solvent-quality-dependent contact formation dynamics in proteins
• Scaling laws in simple and complex proteins: Size scaling effects associated with domain number and folding class
• Spin analogues of proteins: scaling of `folding' properties

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