Simulations of toy proteins

DOI10.1007/BFB0106883MaRDI QIDQ4801354zbMATH OpenFDO

Authors Anders Irbäck

Publication date 7 April 2003

Published in Field Theoretical Tools for Polymer and Particle Physics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/BFB0106883

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

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• Folding of proteins in Go models with angular interactions
• Simplified models of protein folding exploiting the Lagrange radius of gyration of the hydrophobic component
• Dynamic polyhedral models of globular proteins
• Structural susceptibilities in toy models of proteins
• The dissipative dynamics and relaxation behavior of a generic model for hydrophobic collapse
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• Statistical analysis on the globular shape of protein conformations
• Three-dimensional off-lattice AB model protein with the 89-residue Fibonacci sequence
• Structural entropy to characterize small proteins (70 aa) and their interactions
• Hydrophobic collapse in (in silico) protein folding

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