Gibbs/MCMC sampling for multiple RNA interaction with sub-optimal solutions

DOI10.1007/978-3-319-38827-4_7MaRDI QIDQ2823015zbMATH OpenOpenAlexFDO

Authors Saad Mneimneh, Syed Ali Ahmed

Publication date 6 October 2016

Published in Algorithms for Computational Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-319-38827-4_7

zbMATH Keywords

clusteringGibbs samplingMetropolis-Hastings algorithmmultiple RNA interactionRNA structure

Mathematics Subject Classification ID

Dynamic programming (90C39) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Recommendations

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Cites work

• A combinatorial approach for multiple RNA interaction: formulations, approximations, and heuristics
• Approximating the maximum multiple RNA interaction problem
• Approximation algorithms for the maximum multiple RNA interaction problem
• Biological Sequence Analysis
• scientific article; zbMATH DE number 911360 (Why is no real title available?)
• Monte Carlo sampling methods using Markov chains and their applications
• Predicting RNA secondary structures with pseudoknots by MCMC sampling
• Research in Computational Molecular Biology
• Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of Images
• The Collapsed Gibbs Sampler in Bayesian Computations with Applications to a Gene Regulation Problem
• Thermodynamic Analysis of Interacting Nucleic Acid Strands

Cited in

(1)

• A combinatorial approach for multiple RNA interaction: formulations, approximations, and heuristics

Describes a project that uses

Uses Software

• RNAG

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