Gibbs sampler for statistical multiple alignment

MaRDI QIDQ3378798zbMATH OpenFDO

Authors Jens Ledet Jensen, Jotun Hein

Publication date 4 April 2006

zbMATH Keywords

3-star tree, EM-algorithm, evolutionary model, hidden Markov model, Markov chain Monte Carlo

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Numerical analysis or methods applied to Markov chains (65C40) Problems related to evolution (92D15)

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(7)

• The Gibbs cloner for combinatorial optimization, counting and sampling
• A note on probabilistic models over strings: the linear algebra approach
• Protein domain hierarchy Gibbs sampling strategies
• Bayesian Models for Multiple Local Sequence Alignment and Gibbs Sampling Strategies
• Motif Yggdrasil: Sampling from a Tree Mixture Model
• Simultaneous sequence alignment and tree construction using hidden Markov models
• Comparing the performance of a reversible jump Markov chain Monte Carlo algorithm for DNA sequences alignment

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