Simultaneous sequence alignment and tree construction using hidden Markov models

MaRDI QIDQ5456753zbMATH OpenFDO

Authors Robert C. Edgar, Kimmen Sjølander

Publication date 14 April 2008

Mathematics Subject Classification ID

Markov processes (60J99) Computational methods for problems pertaining to biology (92-08) Biochemistry, molecular biology (92C40)

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Cited in

(6)

• Testing homology with contact accepted mutatiOn (CAO): A contact-based Markov model of protein evolution
• Brief introduction to self-adapting hidden Markov model program for multiple sequences alignment
• Counting, Generating and Sampling Tree Alignments
• BayesCAT: Bayesian co-estimation of alignment and tree
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• Counting, Generating, Analyzing and Sampling Tree Alignments

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Uses Software

• Balibase

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