HTRX

MaRDI QIDQ61521CRANFDO

Authors Daniel J. Lawson, Yaoling Yang

Last update 9 February 2024

Copyright license GNU General Public License, version 3.0

Software version identifier 1.2.2, 1.0.7, 1.1.0, 1.2.1, 1.2.2, 1.2.4

Description

Detection of haplotype patterns that include single nucleotide polymorphisms (SNPs) and non-contiguous haplotypes that are associated with a phenotype. Methods for implementing HTRX are described in Yang Y, Lawson DJ (2023) <doi:10.1093/bioadv/vbad038> and Barrie W, Yang Y, Irving-Pease E.K, et al (2024) <doi:10.1038/s41586-023-06618-z>.

Cites work

• Elevated genetic risk for multiple sclerosis emerged in steppe pastoralist populations
• HTRX: an R package for learning non-contiguous haplotypes associated with a phenotype

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