Hypergraphs for predicting essential genes using multiprotein complex data

DOI10.1101/2020.04.03.023937MaRDI QIDQ4958827zbMATH OpenOpenAlexFDO

Authors Florian Klimm, Charlotte M. Deane, Gesine Reinert

Publication date 15 September 2021

Published in Journal of Complex Networks (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1101/2020.04.03.023937

zbMATH Keywords

centralityclustering coefficientgene essentialityhierarchical exponenthypergraphsnull modelsprotein interaction networks

Mathematics Subject Classification ID

Hypergraphs (05C65) Genetics and epigenetics (92D10) Protein sequences, DNA sequences (92D20)

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(9)

• Characterization of BioPlex network by topological properties
• Cooperative epidemic spreading in simplicial complex
• Modularity Maximization for Graphons
• Fragmentation from group interactions: a higher-order adaptive voter model
• Hypergraphs and centrality measures identifying key features in gene expression data
• Topological data analysis of truncated contagion maps
• Tensor recovery in high-dimensional Ising models
• MHPD: an efficient evaluation method for influence maximization on hypergraphs
• Structure-and-embedding-based centrality on network fragility in hypergraphs

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