Characterization of BioPlex network by topological properties

DOI10.1016/J.JTBI.2016.08.028MaRDI QIDQ1664450zbMATH OpenOpenAlexWikidataFDO

Authors Lei Yang, Shiyuan Wang, Meng Zhou, Xiaowen Chen, Yongchun Zuo, Yingli Lv

Publication date 27 August 2018

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2016.08.028

zbMATH Keywords

random networksprotein interactionstopological patterncorrelation profile

Mathematics Subject Classification ID

Applications of graph theory (05C90) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)

Recommendations

• HIERARCHICAL AND TOPOLOGICAL STUDY OF THE PROTEIN–PROTEIN INTERACTION NETWORKS
• Bio-entity network for analysis of protein-protein interaction networks
• Analysis and identification of toxin targets by topological properties in protein-protein interaction network
• Characterizing network topology of disordered proteins in protein interaction networks
• Hypergraphs for predicting essential genes using multiprotein complex data

Cites work

• scientific article; zbMATH DE number 3621535 (Why is no real title available?)
• 2D-MH: a web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids
• An application of gene comparative image for predicting the effect on replication ratio by HBV virus gene missense mutation
• Bio-entity network for analysis of protein-protein interaction networks
• Collective dynamics of `small-world' networks
• Some remarks on protein attribute prediction and pseudo amino acid composition
• The disposition of the LZCC protein residues in wenxiang diagram provides new insights into the protein-protein interaction mechanism
• pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach

Cited in

(7)

• Analysis and identification of toxin targets by topological properties in protein-protein interaction network
• Hypergraphs for predicting essential genes using multiprotein complex data
• scientific article; zbMATH DE number 5004851 (Why is no real title available?)
• Bio-entity network for analysis of protein-protein interaction networks
• Characterizing network topology of disordered proteins in protein interaction networks
• HIERARCHICAL AND TOPOLOGICAL STUDY OF THE PROTEIN–PROTEIN INTERACTION NETWORKS
• Identification of essential nodes based on topology of a bionetwork

Describes a project that uses

Uses Software

• pSuc-Lys
• Wenxiang
• DAVID
• iEnhancer-2L
• 2D-MH
• iPPI-Esml
• Prnam-PC
• iMiRNA-PseDPC
• iDHS-EL
• iPPBS-Opt
• iSuc-PseOpt
• iPTM-mLys
• pSumo-CD
• iACP
• iCar-PseCp
• iHyd-PseCp
• iPhos-PseEvo
• iPhos-PseEn
• iROS-gPseKNC
• iRNA-PseU
• FoldRate

This page was built for publication: Characterization of BioPlex network by topological properties

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q1664450)