Identification of protein functions in mouse with a label space partition method

DOI10.3934/MBE.2022176MaRDI QIDQ2130449zbMATH OpenOpenAlexFDO

Authors Xuan Li, Lin Lu, Lei Chen

Publication date 25 April 2022

Published in Mathematical Biosciences and Engineering (Search for Journal in Brave)

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL https://doi.org/10.3934/mbe.2022176

zbMATH Keywords

label space partitionmouse proteinmulti-label classificationprotein functionRAKEL

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

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Cites work

• A similarity-based method for prediction of drug side effects with heterogeneous information
• Do we need hundreds of classifiers to solve real world classification problems?
• ECS: an automatic enzyme classifier based on functional domain composition
• Fast unfolding of communities in large networks
• MEKA: a multi-label/multi-target extension to WEKA
• Random forests
• Support-vector networks

Cited in

(1)

• Classification of proteins multiple-labelled and single-labelled with protein functional classes

Describes a project that uses

Uses Software

• node2vec
• DeepWalk
• iMPTCE-Hnetwork
• word2vec

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