Improved haplotype assembly using Xor genotypes

DOI10.1016/J.JTBI.2012.01.003MaRDI QIDQ1784030zbMATH OpenOpenAlexWikidataFDO

Authors Sayyed Rasoul Mousavi

Publication date 26 September 2018

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2012.01.003

zbMATH Keywords

SNPcomputational biologyhaplotype assemblysingle individual haplotypingXor genotype

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Analysis of algorithms and problem complexity (68Q25) Software, source code, etc. for problems pertaining to biology (92-04)

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Cites work

• scientific article; zbMATH DE number 437557 (Why is no real title available?)
• scientific article; zbMATH DE number 3571502 (Why is no real title available?)
• scientific article; zbMATH DE number 3639144 (Why is no real title available?)
• A practical exact algorithm for the individual haplotyping problem MEC/GI
• Combinatorial Pattern Matching
• Haplotype Assembly from Weighted SNP Fragments and Related Genotype Information
• The complexity of theorem-proving procedures
• The haplotype assembly model with genotype information and iterative local-exhaustive search algorithm
• Theory and Applications of Satisfiability Testing

Cited in

(3)

• Data Rotation Improves Genomotyping Efficiency
• Maximum likelihood model based on minor allele frequencies and weighted Max-SAT formulation for haplotype assembly
• Haplotype Assembly from Weighted SNP Fragments and Related Genotype Information

Describes a project that uses

Uses Software

• HapCUT
• UBCSAT

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