Maximum likelihood model based on minor allele frequencies and weighted Max-SAT formulation for haplotype assembly

DOI10.1016/J.JTBI.2014.01.036zbMATH Open1412.92207OpenAlexW2016161976WikidataQ47803338 ScholiaQ47803338MaRDI QIDQ2632793FDOQ2632793

Authors: Ilnaz Khodadadi, Hossein Falsafain, Reza Nadimi, Nasser Ghadiri, Sayyed Rasoul Mousavi 

Publication date: 15 May 2019

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2014.01.036

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zbMATH Keywords

algorithmssingle nucleotide polymorphismminimum error correctionsingle individual haplotypinghaplotype reconstruction

Mathematics Subject Classification ID

Genetics and epigenetics (92D10)

Cites Work

• Title not available (Why is that?)
• Exploiting Cycle Structures in Max-SAT
• A practical exact algorithm for the individual haplotyping problem MEC/GI
• The haplotype assembly model with genotype information and iterative local-exhaustive search algorithm
• Improved haplotype assembly using Xor genotypes
• Haplotype Assembly from Weighted SNP Fragments and Related Genotype Information

Cited In (1)

• Haplotype Assembly from Weighted SNP Fragments and Related Genotype Information

Uses Software

• ReFHap
• HapCUT

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