Maximum likelihood model based on minor allele frequencies and weighted Max-SAT formulation for haplotype assembly

DOI10.1016/J.JTBI.2014.01.036MaRDI QIDQ2632793zbMATH OpenOpenAlexWikidataFDO

Authors Ilnaz Khodadadi, Hossein Falsafain, Reza Nadimi, Nasser Ghadiri, Sayyed Rasoul Mousavi

Publication date 15 May 2019

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2014.01.036

zbMATH Keywords

algorithmssingle nucleotide polymorphismminimum error correctionsingle individual haplotypinghaplotype reconstruction

Mathematics Subject Classification ID

Genetics and epigenetics (92D10)

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Cites work

• scientific article; zbMATH DE number 3639144 (Why is no real title available?)
• A practical exact algorithm for the individual haplotyping problem MEC/GI
• Exploiting Cycle Structures in Max-SAT
• Haplotype Assembly from Weighted SNP Fragments and Related Genotype Information
• Improved haplotype assembly using Xor genotypes
• The haplotype assembly model with genotype information and iterative local-exhaustive search algorithm

Cited in

(1)

• Haplotype Assembly from Weighted SNP Fragments and Related Genotype Information

Describes a project that uses

Uses Software

• HapCUT
• ReFHap

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