Introduction to the peptide binding problem of computational immunology: new results

DOI10.1007/S10208-013-9173-9MaRDI QIDQ486674zbMATH OpenOpenAlexFDO

Authors Wen-Jun Shen, Hau-San Wong, Quan-Wu Xiao, Stephen Smale, Xin Guo

Publication date 16 January 2015

Published in Foundations of Computational Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s10208-013-9173-9

zbMATH Keywords

reproducing kernel Hilbert spacestring kernelHLA DRB allele classificationmajor histocompatibility complexpeptide binding prediction

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Learning and adaptive systems in artificial intelligence (68T05) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

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Cites work

• scientific article; zbMATH DE number 45848 (Why is no real title available?)
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• Generalized Cross-Validation as a Method for Choosing a Good Ridge Parameter
• Hodge theory on metric spaces. Appendix by Anthony W. Baker
• Immunological bioinformatics.
• Learning Theory
• Mathematics of the neural response
• On ordered weighted averaging aggregation operators in multicriteria decisionmaking
• Probability density functions based weights for ordered weighted averaging (OWA) operators: an example of water quality indices
• Theory of Reproducing Kernels

Cited in

(10)

• Learning theory and approximation. Abstracts from the workshop held June 24--30, 2012.
• Distributed learning with indefinite kernels
• Rates of convergence of randomized Kaczmarz algorithms in Hilbert spaces
• Chapter 9: Choquet integral algorithm for T-cell epitope prediction using support vector machine
• scientific article; zbMATH DE number 1531957 (Why is no real title available?)
• scientific article; zbMATH DE number 2220336 (Why is no real title available?)
• Relating amino acid sequence to phenotype: analysis of peptide-binding data
• Distributed learning with regularized least squares
• Research in Computational Molecular Biology
• A topological approach to spectral clustering

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Uses Software

• NetMHCIIpan

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