On using physico-chemical properties of amino acids in string kernels for protein classification via support vector machines

DOI10.1007/S11424-015-2156-YMaRDI QIDQ2517119zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Kiyoko F. Aoki-Kinoshita, Wai-Ki Ching, Hao Jiang, Li-Min Li

Publication date 14 August 2015

Published in Journal of Systems Science and Complexity (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s11424-015-2156-y

zbMATH Keywords

AA indexAA spectrum kernelcorrelation spectrum kernelphysico-chemical propertiesstring kernelweighted spectrum kernel

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Protein sequences, DNA sequences (92D20)

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Cites work

• scientific article; zbMATH DE number 3446442 (Why is no real title available?)
• scientific article; zbMATH DE number 823069 (Why is no real title available?)
• scientific article; zbMATH DE number 3067835 (Why is no real title available?)
• On network-based kernel methods for protein-protein interactions with applications in protein functions prediction
• Prediction of Carbohydrate-Binding Proteins from Sequences Using Support Vector Machines
• Slow light as a black hole analogue?
• Support-vector networks

Cited in

(2)

• Introduction to the peptide binding problem of computational immunology: new results
• A Class of New Kernels Based on High-Scored Pairs of k-Peptides for SVMs and Its Application for Prediction of Protein Subcellular Localization

Describes a project that uses

Uses Software

• LIBSVM
• mGene
• KEGG
• AAindex
• KIRMES

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