Robust Perron cluster analysis in conformation dynamics (Q1774997)
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English | Robust Perron cluster analysis in conformation dynamics |
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Robust Perron cluster analysis in conformation dynamics (English)
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4 May 2005
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This paper is organized as follows. In Section 2, the authors revisit the stochastic generalized symmetric eigenproblem corresponding to the Perron cluster of eigenvalues, which can be viewed as being generated from multiple Perron eigenvalue by perturbation. They derive the concept of their new algorithm in Section 3. In Section 4, the Perron cluster analysis problem is formulated as a constrained maximization problem. In Section 5, the problem is reformulated as an unconstrained maximization problem. In Section 6, numerical experiments are given to document the improvement by their new algorithm over the former one.
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Markov chains
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cluster algorithms
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cluster of eigenvalues
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Perron cluster analysis
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conformation dynamics
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stochastic matrices
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symmetric eigenproblem
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numerical experiments
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